Browsing by Author "GARAIZAR CANDINA, JAVIER"
Now showing items 1-14 of 14
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A Practical Bioinformatics Workflow for Routine Analysis of Bacterial WGS Data
Atxaerandio Landa, Aitor; Arrieta Gisasola, Ainhoa; Laorden Muñoz, Lorena ; Bikandi Bikandi, Joseba; Garaizar Candina, Javier ; Martínez Malaxetxebarria, Irati ; Martínez Ballesteros, Ilargi (MDPI, 2022-11-29)The use of whole-genome sequencing (WGS) for bacterial characterisation has increased substantially in the last decade. Its high throughput and decreasing cost have led to significant changes in outbreak investigations and ... -
Anianabacter salinae gen. nov., sp. nov. ASV31T, a Facultative Alkaliphilic and Extremely Halotolerant Bacterium Isolated from Brine of a Millennial Continental Saltern
Azpiazu Muniozguren, Maia; García, Minerva; Laorden Muñoz, Lorena ; Martínez Malax-Echevarría, Irati ; Seoane Parra, Sergio; Bikandi Bikandi, Joseba; Garaizar Candina, Javier ; Martínez Ballesteros, Ilargi (MDPI, 2022-11-21)During a prokaryotic diversity study in Añana Salt Valley, a new Rhodobacteraceae member, designated ASV31T, was isolated from Santa Engracia spring water. It was extremely halotolerant, tolerating up to 23% NaCl, and ... -
Bacterial Genomics and Epidemiology
Innovative technologies for Whole-Genome Sequencing (WGS) help to improve our understanding of the epidemiology and pathogenesis of bacterial infectious diseases and are becoming affordable for most microbiological ... -
Caracterización Molecular Y Epidemiológica de Cepas Monofásicas de Salmonella Enterica
Laorden Muñoz, Lorena (Servicio Editorial de la Universidad del País Vasco/Euskal Herriko Unibertsitatearen Argitalpen Zerbitzua, 2014-07-07)La salmonelosis, producida por bacterias del género Salmonella, es una de las intoxicaciones alimentarias más comunes en los países desarrollados siendo la principal manifestación la gastroenteritis aguda. Salmonella ... -
Conventional microbiological diagnosis and epidemiology of bacteraemia in a tertiary and a district hospital over a six-year period
Aguirre Quiñonero, Amaia (2022-04-08)La sepsis es un síndrome clínico de extrema gravedad, con una tasa de mortalidad elevada, una incidencia creciente e importantes costes asociados. Las tasas de morbimortalidad están relacionadas con el retraso en la ... -
Desarrollo de métodos de detección de salmonella basados en la reacción en cadena de la polimerasa y su validación en muestras alimentarias
Martínez Ballesteros, Ilargi (Servicio Editorial de la Universidad del País Vasco/Euskal Herriko Unibertsitatearen Argitalpen Zerbitzua, 2014-05-06)[ES] Salmonella es uno de los patógenos alimentarios más importantes a nivel mundial y causante de enfermedades gastroentéricas en humanos y animales. La presencia de Salmonella en un alimento, sea en la cantidad que ... -
Fungal Diversity and Composition of the Continental Solar Saltern in Añana Salt Valley (Spain)
Azpiazu Muniozguren, Maia; Pérez, Alba; Rementeria Ruiz, Aitor Domingo; Martínez Malax-Echevarría, Irati ; Alonso Monsalve, Rodrigo; Laorden Muñoz, Lorena ; Gamboa, Javier; Bikandi Bikandi, Joseba; Garaizar Candina, Javier ; Martínez Ballesteros, Ilargi (MDPI, 2021-12-14)The Añana Salt Valley in Spain is an active continental solar saltern formed 220 million years ago. To date, no fungal genomic studies of continental salterns have been published, although DNA metabarcoding has recently ... -
Genotyping Study of Salmonella 4,[5],12:i:- Monophasic Variant of Serovar Typhimurium and Characterization of the Second-Phase Flagellar Deletion by Whole Genome Sequencing
Arrieta Gisasola, Ainhoa; Atxaerandio Landa, Aitor; Garrido, Victoria; Grilló, María Jesús; Martínez Ballesteros, Ilargi ; Laorden Muñoz, Lorena ; Garaizar Candina, Javier ; Bikandi Bikandi, Joseba (MDPI, 2020-12-21)After Salmonella Enteritidis and S. Typhimurium, S. 4,[5],12:i:- is the most reported serovar in human clinical cases. During the past 20 years, many tools have been used for its typing and second-phase flagellar deletion ... -
Molecular Epidemiology, Antimicrobial Surveillance, and PK/PD Analysis to Guide the Treatment of Neisseria gonorrhoeae Infections
Alonso Monsalve, Rodrigo; Rodríguez Achaerandio, Ainara; Aguirre Quiñonero, Amaia; Artetxe, Aitor; Martínez Ballesteros, Ilargi ; Rodríguez Gascón, Alicia; Garaizar Candina, Javier ; Canut Blasco, Andrés (MDPI, 2021-10-15)The aim of this study was to apply molecular epidemiology, antimicrobial surveillance, and PK/PD analysis to guide the antimicrobial treatment of gonococci infections in a region of the north of Spain. Antibiotic susceptibility ... -
Online exercise for the design and simulation of PCR and PCR-RFLP experiments
San Millán Gutiérrez, Rosario María ; Martínez Ballesteros, Ilargi ; Rementeria Ruiz, Aitor Domingo; Garaizar Candina, Javier ; Bikandi Bikandi, Joseba (BioMed Central, 2013-12-05)[EN] Background: Polymerase Chain Reaction (PCR) and Restriction Fragment Length Polymorphism of PCR products (PCR-RFLP) are extensively used molecular biology techniques. An exercise for the design and simulation of PCR ... -
Salmonella enterica 4,5,12:b:- serotipo berriaren karakterizazioa eta etxeko dortokekin erlazionatutako arriskua
Arrieta Gisasola, Ainhoa; Bikandi Bikandi, Joseba; Garaizar Candina, Javier ; Herrera León, Silvia; Laorden Muñoz, Lorena (Servicio Editorial de la Universidad del País Vasco/Euskal Herriko Unibertsitatearen Argitalpen Zerbitzua, 2021)Salmonellosis, is one of the most common toxinfection caused by bacteria of the genus Salmonella in developed countries. In general, human salmonellosis is associated with contaminated food. However, contact with animals ... -
Salmonella enterica espeziearen andui monofasikoen karakterizazio molekularra eta epidemiologikoa
Laorden Muñoz, Lorena ; Herrera León, Silvia; Bikandi Bikandi, Joseba; Garaizar Candina, Javier (Servicio Editorial de la Universidad del País Vasco/Euskal Herriko Unibertsitatearen Argitalpen Zerbitzua, 2018)Salmonellosis, is one of the most common food-poisoning disease caused by bacteria of the genus Salmonella in developed countries. More than 2,500 serotypes of Salmonella enterica species are described today, but a few ... -
Salmonella enterica-ren andui monofasikoen karakterizazio molekularra eta epidemiologikoa
Laorden Muñoz, Lorena (Servicio Editorial de la Universidad del País Vasco/Euskal Herriko Unibertsitatearen Argitalpen Zerbitzua, 2014-07-07)Salmonelosia, Salmonella generoko bakterioak eragindako janari intoxikazio ohikoenetariko bat da herrialde garatuetan eta gastroenteritis zorrotza da manifestazio nagusia. Salmonella enterica XIX mendetik ezaguna den ... -
Virulotyping of Salmonella Enterica Serovar Typhi Isolates from Pakistan: Absence of Complete SPI-10 in Vi Negative Isolates
Liaquat, Sadia; Sarwar, Yasra; Ali, Aamir; Haque, Abdul; Farooq, Muhammad; Martínez Ballesteros, Ilargi ; Laorden Muñoz, Lorena ; Garaizar Candina, Javier ; Bikandi Bikandi, Joseba (Public Library Science, 2018-11-30)The pathogenesis of Salmonella enterica serovar Typhi (S. Typhi), the cause of typhoid fever in humans, is mainly attributed to the acquisition of horizontally acquired DNA elements. Salmonella pathogenicity islands (SPIs) ...