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Multiple SNP Markers Reveal Fine-Scale Population and Deep Phylogeographic Structure in European Anchovy (Engraulis encrasicolus L.)
(Public Library of Science, 2012-07-30)
Geographic surveys of allozymes, microsatellites, nuclear DNA (nDNA) and mitochondrial DNA (mtDNA) have detected several genetic subdivisions among European anchovy populations. However, these studies have been limited in ...
Response of Horticultural Soil Microbiota to Different Fertilization Practices
(MDPI, 2020-10-06)
Environmentally friendly agricultural production necessitates manipulation of microbe–plant interactions, requiring a better understanding of how farming practices influence soil microbiota. We studied the effect of ...
Impact of dimethylpyrazole-based nitrification inhibitors on soil-borne bacteria
(Elsevier, 2021-06-15)
[EN] Nitrogen (N) input from fertilizers modifies the properties of agricultural soils as well as bacterial community
diversity, composition and relationships. This can lead to negative impacts such as the deterioration ...
Authoritative subspecies diagnosis tool for European honey bees based on ancestryinformative SNPs
(BMC, 2021-02-03)
Background With numerous endemic subspecies representing four of its five evolutionary lineages, Europe holds a large fraction of Apis mellifera genetic diversity. This diversity and the natural distribution range have ...
Differences in honey bee bacterial diversity andcomposition in agricultural and pristine environments–afield study
(Springer, 2020-07)
Agrochemicals and biocides are suspected to cause a dysbiosis of honey bee microbiota, decreasing colonies ability to respond to the environment. As a first step to investigate agriculture and beekeeping impact, hives ...
EXFI: Exon and splice graph prediction without a reference genome
(Wiley, 2020-08)
For population genetic studies in nonmodel organisms, it is important to use every single source of genomic information. This paper presents EXFI, a Python pipeline that predicts the splice graph and exon sequences using ...
Identification of Horse Chestnut Coat Color Genotype Using SNaPshot
(Biomed Central, 2009-12-16)
BACKGROUND: The Cantabrian Coast horse breeds of the Iberian Peninsula have mainly black or bay colored coats, but alleles responsible for a chestnut coat color run in these breeds and occasionally, chestnut horses are ...
Genomic Selection Signatures In Sheep From The Western Pyrenees
(Biomed Central, 2018-03-22)
Background: The current large spectrum of sheep phenotypic diversity results from the combined product of sheep selection for different production traits such as wool, milk and meat, and its natural adaptation to new ...
Digging into the Genomic Past of Swiss Honey Bees by Whole-Genome Sequencing Museum Specimens
(Oxford University Press, 2020-12)
Historical specimens in museum collections provide opportunities to gain insights into the genomic past. For the Western honey bee, Apis mellifera L., this is particularly important because its populations are currently ...
Population Structure and Diversity in European Honey Bees (Apis mellifera L.)-An Empirical Comparison of Pool and Individual Whole-Genome Sequencing
(MDPI, 2022-01-21)
Background: Whole-genome sequencing has become routine for population genetic studies. Sequencing of individuals provides maximal data but is rather expensive and fewer samples can be studied. In contrast, sequencing a ...